Khonje is a surname. Notable people with the surname include:
Ceciwa Khonje (born 1938), Malawian broadcaster and political activist Nelson P. W. Khonje (1923–2019), Malawian politician
See also Ektu Aalor Khonje, upcoming Indian Bengali-language film Ekti Tarar Khonje, 2010 Indian Bengali-language film