The 2002–03 Estonian Cup () was the 13th season of the Estonian football knockout tournament. Winners of the cup qualified for the 2003–04 UEFA Cup qualifying round. The defending champion, Levadia Tallinn, was knocked out in the semi-final in a penalty shoot-out against Flora.
The competition culminated with the final held at Kadriorg Stadium, Tallinn on 27 May 2003 with TMVK taking the title after the penalty shoot-out 4–1 after the game was finished after extra-time 2–2.
All in all, 24 teams took part of the competition.
First round
!colspan="3" align="center"|12 October
!colspan="3" align="center"|13 October
!colspan="3" align="center"|23 October
Second round
!colspan="3" align="center"|9 November
!colspan="3" align="center"|10 November
Quarter-finals The first legs were played on 23 and 24 March 2003, and the second legs on 10 and 11 April 2003.
Semi-finals The first legs were played on 8 and 9 May 2003, and the second legs on 18 May 2003.
Final
External links Official site
References Estonia Cup 2002/03 at RSSSF