The 1999–2000 Nebraska Cornhuskers men's basketball team represented the University of Nebraska–Lincoln during the 1999–2000 college basketball season. Led by head coach Danny Nee, the Cornhuskers competed in the Big Twelve Conference and played their home games at the Bob Devaney Sports Center.
Nebraska finished the season with a 11–19 record. The Cornhuskers were eliminated in the first round of the Big 12 tournament to Baylor 63–55 on March 9, 2000.
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