The 1999 Florida A&M Rattlers football team represented Florida A&M University as a member of the Mid-Eastern Athletic Conference (MEAC) during the 1999 NCAA Division I-AA football season. Led by sixth-year head coach Billy Joe, the Rattlers compiled an overall record of 11–4, with a mark of 7–1 in conference play, and finished second in the MEAC. Florida A&M finished their season with a loss against Youngstown State in the Division I-AA playoffs.
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