This is a list of native amphibians in Indonesia.
Order: Anura Family: Bombinatoridae Gray, 1825 Genus: Barbourula Taylor and Noble, 1924 Barbourula kalimantanensis Iskandar, 1978 Family: Bufonidae Gray, 1825 Genus: Ansonia Stoliczka, 1870 Ansonia albomaculata Inger, 1960 Ansonia glandulosa Iskandar and Mumpuni, 2004 Ansonia hanitschi Inger, 1960 Ansonia latidisca Inger, 1966 Ansonia leptopus (Günther, 1872) Ansonia longidigita Inger, 1960 Ansonia minuta Inger, 1960 Ansonia spinulifer (Mocquard, 1890) Genus: Duttaphrynus Frost, Grant, Faivovich, Bain, Haas, Haddad, de Sá, Channing, Wilkinson, Donnellan, Raxworthy, Campbell, Blotto, Moler, Drewes, Nussbaum, Lynch, Green, and Wheeler, 2006 Duttaphrynus melanostictus (Schneider, 1799) Duttaphrynus sumatranus (Peters, 1871) Duttaphrynus totol (Ohler, 2010) Duttaphrynus valhallae (Meade-Waldo, 1909) Genus: Ingerophrynus Frost, Grant, Faivovich, Bain, Haas, Haddad, de Sá, Channing, Wilkinson, Donnellan, Raxworthy, Campbell, Blotto, Moler, Drewes, Nussbaum, Lynch, Green, and Wheeler, 2006 Ingerophrynus biporcatus (Gravenhorst, 1829) Ingerophrynus celebensis (Günther, 1859) Ingerophrynus claviger (Peters, 1863) Ingerophrynus divergens (Peters, 1871) Ingerophrynus parvus (Boulenger, 1887) Ingerophrynus quadriporcatus (Boulenger, 1887) Genus: Leptophryne Fitzinger, 1843 Leptophryne borbonica (Tschudi, 1838) Leptophryne cruentata (Tschudi, 1838) Genus: Pelophryne Barbour, 1938 Pelophryne guentheri (Boulenger, 1882) Pelophryne rhopophilia Inger and Stuebing, 1996 Pelophryne signata (Boulenger, 1895) Genus: Phrynoidis Fitzinger in Treitschke, 1842 Phrynoidis asper (Gravenhorst, 1829) Phrynoidis juxtasper (Inger, 1964) Genus: Pseudobufo Tschudi, 1838 Pseudobufo subasper Tschudi, 1838 Genus: Rentapia Chan, Grismer, Zachariah, Brown, and Abraham, 2016 Rentapia hosii (Boulenger, 1892) Genus: Rhinella Fitzinger, 1826 Rhinella marina (Linnaeus, 1758) Genus: Sabahphrynus Matsui, Yambun, and Sudin, 2007 Sabahphrynus maculatus (Mocquard, 1890) Genus: Sigalegalephrynus Sigalegalephrynus mandailinguensis Smart, Sarker, Arifin, Harvey, Sidik, Hamidy, Kurniawan, and Smith, 2017 Sigalegalephrynus minangkabauensis Smart, Sarker, Arifin, Harvey, Sidik, Hamidy, Kurniawan, and Smith, 2017 Sigalegalephrynus burnitelonensis Sarker, Wostl, Thammachoti, Sidik, Hamidy, Kurniawan, and Smith, 2019 Sigalegalephrynus gayoluesensis Sarker, Wostl, Thammachoti, Sidik, Hamidy, Kurniawan, and Smith, 2019 Sigalegalephrynus harveyi Sarker, Wostl, Thammachoti, Sidik, Hamidy, Kurniawan, and Smith, 2019 Family: Ceratobatrachidae Boulenger, 1884 Subfamily: Alcalinae Brown, Siler, Richards, Diesmos, and Cannatella, 2015 Genus: Alcalus Brown, Siler, Richards, Diesmos, and Cannatella, 2015 Alcalus baluensis (Boulenger, 1896) Alcalus rajae (Iskandar, Bickford, and Arifin, 2011) Subfamily: Ceratobatrachinae Boulenger, 1884 Genus: Cornufer Tschudi, 1838 Cornufer batantae (Zweifel, 1969) Cornufer bimaculatus (Günther, 1999) Cornufer cheesmanae (Parker, 1940) Cornufer cryptotis (Günther, 1999) Cornufer paepkei (Günther, 2015) Cornufer papuensis (Meyer, 1875) Cornufer punctatus (Peters and Doria, 1878) Cornufer wuenscheorum (Günther, 2006) Family: Dicroglossidae Anderson, 1871 Subfamily: Dicroglossinae Anderson, 1871 Genus: Fejervarya Bolkay, 1915 Fejervarya cancrivora (Gravenhorst, 1829) Fejervarya iskandari Veith, Kosuch, Ohler, and Dubois, 2001 Fejervarya limnocharis (Gravenhorst, 1829) Fejervarya schlueteri (Werner, 1893) Fejervarya verruculosa (Roux, 1911) Genus: Limnonectes Fitzinger, 1843 Limnonectes arathooni (Smith, 1927) Limnonectes asperatus (Inger, Boeadi, and Taufik, 1996) Limnonectes blythii (Boulenger, 1920) Limnonectes dammermani (Mertens, 1929) Limnonectes finchi (Inger, 1966) Limnonectes grunniens (Latreille, 1801) Limnonectes heinrichi (Ahl, 1933) Limnonectes hikidai Matsui and Nishikawa, 2014 Limnonectes ibanorum (Inger, 1964) Limnonectes ingeri (Kiew, 1978) Limnonectes kadarsani Iskandar, Boeadi, and Sancoyo, 1996 Limnonectes kenepaiensis (Inger, 1966) Limnonectes khasianus (Anderson, 1871) Limnonectes kong Dehling and Dehling, 2017 Limnonectes kuhlii (Tschudi, 1838) Limnonectes larvaepartus Iskandar, Evans, and McGuire, 2014 Limnonectes leporinus Andersson, 1923 Limnonectes macrodon (Duméril and Bibron, 1841) Limnonectes macrognathus (Boulenger, 1917) Limnonectes malesianus (Kiew, 1984) Limnonectes microdiscus (Boettger, 1892) Limnonectes microtympanum (Van Kampen, 1907) Limnonectes modestus (Boulenger, 1882) Limnonectes palavanensis (Boulenger, 1894) Limnonectes paramacrodon (Inger, 1966) Limnonectes rhacodus (Inger, Boeadi, and Taufik, 1996) Limnonectes shompenorum Das, 1996 Limnonectes sinuatodorsalis Matsui, 2015 Limnonectes sisikdagu McLeod, Horner, Husted, Barley, and Iskandar, 2011 Limnonectes timorensis (Smith, 1927) Limnonectes tweediei (Smith, 1935) Subfamily: Occidozyginae Fei, Ye, and Huang, 1990 Genus: Occidozyga Kuhl and Van Hasselt, 1822 Occidozyga baluensis (Boulenger, 1896) Occidozyga celebensis Smith, 1927 Occidozyga floresiana Mertens, 1927 Occidozyga lima (Gravenhorst, 1829) Occidozyga semipalmata Smith, 1927 Occidozyga sumatrana (Peters, 1877) Occidozyga tompotika Iskandar, Arifin, and Rachmanasah, 2011 Family: Hylidae Rafinesque, 1815 Family: Megophryidae Bonaparte, 1850 Genus: Leptobrachella Smith, 1925 Leptobrachella baluensis Smith, 1931 Leptobrachella dringi (Dubois, 1987) Leptobrachella gracilis (Günther, 1872) Leptobrachella hamidi (Matsui, 1997) Leptobrachella juliandringi Eto, Matsui, and Nishikawa, 2015 Leptobrachella mjobergi Smith, 1925 Leptobrachella natunae (Günther, 1895) Leptobrachella picta (Malkmus, 1992) Leptobrachella serasanae Dring, 1983 Genus: Leptobrachium Tschudi, 1838 Leptobrachium abbotti (Cochran, 1926) Leptobrachium hasseltii Tschudi, 1838 Leptobrachium hendricksoni Taylor, 1962 Leptobrachium ingeri Hamidy, Matsui, Nishikawa, and Belabut, 2012 Leptobrachium montanum Fischer, 1885 Leptobrachium waysepuntiense Hamidy and Matsui, 2010 Genus: Megophrys Kuhl and Van Hasselt, 1822 Megophrys baluensis (Boulenger, 1899) Megophrys edwardinae Inger, 1989 Megophrys montana (Kuhl and Van Hasselt, 1822) Megophrys nasuta (Schlegel, 1858) Megophrys parallela Inger and Iskandar, 2005 Family: Microhylidae Günther, 1858 (1843) Subfamily: Asterophryinae Günther, 1858 Genus: Aphantophryne Aphantophryne parkeri (Loveridge, 1955) Genus: Asterophrys Tschudi, 1838 Asterophrys eurydactyla (Zweifel, 1972) Asterophrys foja (Günther, Richards, and Tjaturadi, 2016) Asterophrys leucopus Richards, Johnston, and Burton, 1994 Asterophrys marani (Günther, 2009) Asterophrys pullifer (Günther, 2006) Asterophrys slateri Loveridge, 1955 Asterophrys turpicola (Schlegel, 1837) Genus: Austrochaperina Fry, 1912 Austrochaperina basipalmata (Van Kampen, 1906) Austrochaperina blumi Zweifel, 2000 Austrochaperina kosarek Zweifel, 2000 Austrochaperina macrorhyncha (Van Kampen, 1906) Austrochaperina minutissima Günther, 2009 Austrochaperina punctata (Van Kampen, 1913) Austrochaperina rudolfarndti Günther, 2017 Genus: Barygenys Parker, 1936 Genus: Callulops Boulenger, 1888 Callulops biakensis Günther, Stelbrink, and von Rintelen, 2012 Callulops boettgeri (Méhely, 1901) Callulops dubius (Boettger, 1895) Callulops fojaensis Oliver, Richards, and Tjaturadi, 2012 Callulops fuscus (Peters, 1867) Callulops kampeni (Boulenger, 1914) Callulops kopsteini (Mertens, 1930) Callulops valvifer (Barbour, 1910) Callulops wondiwoiensis Günther, Stelbrink, and von Rintelen, 2012 Callulops yapenensis Günther, Stelbrink, and von Rintelen, 2012 Genus: Choerophryne Van Kampen, 1914 Choerophryne amomani Günther, 2008 Choerophryne arndtorum Günther, 2008 Choerophryne laurini (Günther, 2000) Choerophryne microps Günther, 2008 Choerophryne nigrescens Günther, 2008 Choerophryne proboscidea Van Kampen, 1914 Choerophryne rostellifer (Wandolleck, 1911) Choerophryne tubercula (Richards, Johnston, and Burton, 1992) Choerophryne variegata (Van Kampen, 1923) Genus: Cophixalus Boettger, 1892 Cophixalus balbus Günther, 2003 Cophixalus biroi (Méhely, 1901) Cophixalus cheesmanae Parker, 1934 Cophixalus humicola Günther, 2006 Cophixalus monosyllabus Günther, 2010 Cophixalus montanus (Boettger, 1895) Cophixalus pictus Kraus, 2012 Cophixalus rajampatensis Günther, Richards, Tjaturadi, and Krey, 2015 Cophixalus salawatiensis Günther, Richards, Tjaturadi, and Krey, 2015 Cophixalus tetzlaffi Günther, 2003 Cophixalus tridactylus Günther, 2006 Genus: Copiula Méhely, 1901 Copiula derongo (Zweifel, 2000) Copiula exspectata Günther, 2002 Copiula major Günther, 2002 Copiula obsti Günther, 2002 Copiula pipiens Burton and Stocks, 1986 Genus: Gastrophrynoides Noble, 1926 Gastrophrynoides borneensis (Boulenger, 1897) Genus: Hylophorbus Macleay, 1878 Hylophorbus nigrinus Günther, 2001 Hylophorbus picoides Günther, 2001 Hylophorbus rufescens Macleay, 1878 Hylophorbus sextus Günther, 2001 Hylophorbus tetraphonus Günther, 2001 Hylophorbus wondiwoi Günther, 2001 Genus: Mantophryne Boulenger, 1897 Mantophryne lateralis Boulenger, 1897 Genus: Oninia Günther, Stelbrink, and von Rintelen, 2010 Oninia senglaubi Günther, Stelbrink, and von Rintelen, 2010 Genus: Oreophryne Boettger, 1895 Oreophryne albopunctata (Van Kampen, 1909) Oreophryne alticola Zweifel, Cogger, and Richards, 2005 Oreophryne asplenicola Günther, 2003 Oreophryne atrigularis Günther, Richards, and Iskandar, 2001 Oreophryne biroi (Méhely, 1897) Oreophryne brevicrus Zweifel, 1956 Oreophryne brevirostris Zweifel, Cogger, and Richards, 2005 Oreophryne celebensis (Müller, 1894) Oreophryne choerophrynoides Günther, 2015 Oreophryne clamata Günther, 2003 Oreophryne crucifer (Van Kampen, 1913) Oreophryne flava Parker, 1934 Oreophryne frontifasciata (Horst, 1883) Oreophryne furu Günther, Richards, Tjaturadi, and Iskandar, 2009 Oreophryne habbemensis Zweifel, Cogger, and Richards, 2005 Oreophryne idenburgensis Zweifel, 1956 Oreophryne jeffersoniana Dunn, 1928 Oreophryne kapisa Günther, 2003 Oreophryne mertoni (Roux, 1910) Oreophryne minuta Richards and Iskandar, 2000 Oreophryne moluccensis (Peters and Doria, 1878) Oreophryne monticola (Boulenger, 1897) Oreophryne oviprotector Günther, Richards, Bickford, and Johnston, 2012 Oreophryne pseudasplenicola Günther, 2003 Oreophryne roedeli Günther, 2015 Oreophryne rookmaakeri Mertens, 1927 Oreophryne sibilans Günther, 2003 Oreophryne terrestris Zweifel, Cogger, and Richards, 2005 Oreophryne unicolor Günther, 2003 Oreophryne variabilis (Boulenger, 1896) Oreophryne waira Günther, 2003 Oreophryne wapoga Günther, Richards, and Iskandar, 2001 Oreophryne wolterstorffi (Werner, 1901) Oreophryne zimmeri Ahl, 1933 Genus: Sphenophryne Peters and Doria, 1878 Sphenophryne brevicrus (Van Kampen, 1913) Sphenophryne cornuta Peters and Doria, 1878 Sphenophryne schlaginhaufeni Wandolleck, 1911 Genus: Xenorhina Peters, 1863 Xenorhina adisca Kraus and Allison, 2003 Xenorhina anorbis (Blum and Menzies, 1989) Xenorhina arfakiana (Blum and Menzies, 1989) Xenorhina arndti Günther, 2010 Xenorhina bidens Van Kampen, 1909 Xenorhina bouwensi (De Witte, 1930) Xenorhina eiponis Blum and Menzies, 1989 Xenorhina fuscigula (Blum and Menzies, 1989) Xenorhina gigantea Van Kampen, 1915 Xenorhina lanthanites (Günther and Knop, 2006) Xenorhina macrodisca Günther and Richards, 2005 Xenorhina macrops Van Kampen, 1913 Xenorhina mehelyi (Boulenger, 1898) Xenorhina minima (Parker, 1934) Xenorhina multisica (Blum and Menzies, 1989) Xenorhina obesa (Zweifel, 1960) Xenorhina ocellata Van Kampen, 1913 Xenorhina ophiodon (Peters and Doria, 1878) Xenorhina oxycephala (Schlegel, 1858) Xenorhina parkerorum Zweifel, 1972 Xenorhina rostrata (Méhely, 1898) Xenorhina scheepstrai (Blum and Menzies, 1989) Xenorhina schiefenhoeveli (Blum and Menzies, 1989) Xenorhina similis (Zweifel, 1956) Xenorhina varia Günther and Richards, 2005 Subfamily: Chaperininae Peloso, Frost, Richards, Rodrigues, Donnellan, Matsui, Raxworthy, Biju, Lemmon, Lemmon, and Wheeler, 2016