Coral reef protection is the process of modifying human activities to avoid damage to healthy coral reefs and to help damaged reefs recover. The key strategies used in reef protection include defining measurable goals and introducing active management and community involvement to reduce stressors that damage reef health. One management technique is to create Marine Protected Areas (MPAs) that directly limit human activities such as fishing.

Recreational scuba diving can have a measurable adverse impact on tropical coral reefs, mostly due to contact damage of brittle and fragile branched stony corals. The most common damages of corals while diving occurs due to the fins striking the corals as well as hands, knees, and equipment gauges. This can be reduced by improving diver buoyancy and trim skills, and by educating divers on the consequences of clumsy behavior on the reef ecosystem. Divers given a 45-minute presentation on coral biology and protected areas combined with a brief in water demonstration have been shown to cause less damages to corals during their dive.

It takes approximately 10 thousand years for coral polyps to form a reef, and between 100,000 and 30 million years for a fully mature reef to form.

Coral reefs See main articles: Coral Reef, Coral Reef Fish

Coral reefs are among the most productive and biologically diverse ecosystems on Earth. Differences in exposure to wave patterns create a variety of habitat types. The coral need a mutualistic symbiotic relationship with zooxanthellae algae in order to build a reef. The single celled algae derive their nutrients by using photosynthesis, and the coral provide shelter to the algae in return for some of the nutrients. Zooxanthellae populations can die with changing environmental conditions, causing the coral to lose color, known as coral bleaching. Environmental conditions such as a rise in water temperature inflict stress on the corals causing their symbiont Zooxanthellae to be expelled. The loss of Zooxanthellae causes corals to starve because they have lost the sugar food source Zooxanthellae had provided. Corals that require the symbiotic algae receive their vibrant colors from the different species of Zooxanthellae that inhabit them.

Ecosystem services Corals provide millions of people with ecosystem services such as fisheries, medicine, tourism and recreation, coastal protection as well as aesthetic and cultural benefits, yet they constitute a mere 0.2% of the world's marine ecosystems.

Biodiversity Also known as the "rainforests of the sea", coral reefs cover less than 10% of the ocean yet provide a habitat to over 9 million species, approximately one fourth of all marine life, for food, shelter, and even hunting grounds for predators. Species found on coral reefs include fish, invertebrates, birds, and megafauna such as sharks, sea turtles, and marine mammals. Finally, they serve as essential spawning, nursing, and breeding grounds for numerous organisms.

Coastal Protection Coral reefs provide complex structures that buffer the ocean's waves, protecting coastlines from strong currents and nasty storms. Approximately 500 million people live within 100 km of coral reefs and rely on them for this protection. Not only are they critical in preventing the loss of lives, property damage, and erosion, but they also serve as a barrier for harbors and ports that depend on them economically.

Fisheries Over a billion people globally depend on the fish that live among coral reefs as a major food source. It is estimated that half of all US commercial and recreational fisheries depend on coral reefs to provide them over $100 million annually. Globally, fisheries account for $5.7 billion of the net income provided by coral reefs.

Medicine Species found in coral ecosystems produce chemical compounds that are used to develop new medicines to treat cancer, arthritis, asthma, heart disease, ulcers, bacterial infections, and viruses. As early as the 14th century, the medicinal properties of coral reef dwelling species were utilized. Antiviral extracts and tonics continue to be studied and toxic compounds such as neurotoxins discovered in coral reefs have proven beneficial as painkillers. Diterpenes isolated from coral have been shown to exhibit anti-inflammatory as well as anti-microbial properties that are useful in medicinal therapies. The limestone skeleton of coral has been tested and used for human bone grafts, due to its porous nature and has a lower rate of rejection than artificial bone graft materials.

Tourism and recreation Millions of scuba divers and snorkelers visit coral reefs every year to observe their incredible beauty, as well as beachgoers who are protected by the reefs. Local economies rely heavily on coral reefs, receiving about $9.6 billion through diving tours, recreational fishing trips, hotels, and restaurants.

General interests There are four main categories of interest the public should have for the preservation of coral reefs: the preservation of natural beauty and value, the promotion of the local economy, potential source of new biological products, and preservation of the world ecosystems of which they are a part.

Over one-third of marine species live in coral reef ecosystems. These provide a beautiful underwater experience for snorkelers and divers with a significant tourism value. This great genetic biodiversity has a lot of potential for industries like pharmaceutics, biochemistry, and cosmetics. This biodiversity also boosts the economy through an increase in marine tourism and commercial fisheries. Long-term, coral reefs have been recognized as large contributors to the absorption of carbon dioxide emissions which has been an important part of the mitigation of climate change.

Stressors Two types of stressors are associated with reef systems: natural and human-induced. The effects of these stressors can range from negligible to catastrophic.

The warming waters, ocean pH changes and sea level rise associated with climate change operate on a global basis.

Localized examples include residential, developmental, agricultural and industrial runoff, sedimentation from land clearing, human sewage and toxic discharges.

Acute stressors can inflict other damage, via unsustainable fishing practices, boat anchors or accidental groundings. Some fishing practices are destructive to reef habitats, such as bottom trawling, dynamite fishing and cyanide fishing. Ghost fishing (unintended damage from abandoned fishing equipment) harms many coral reefs. Even small-scale fishing can damage reefs if herbivores are removed and thereby not allowed to protect reefs from encroachment by algae. Boaters can damage coral by dropping their anchors on reefs instead of sand.Bartels, Paul. "Fragile reefs: handle with care." Cruising World 22.n1 (Jan 1996). 15 Oct. 2009 . Accidental boat groundings can obliterate areas of coral reef. Lettuce corals and branching corals such as elkhorn and finger coral are fragile, but even massive boulder corals can be crushed or broken and turned upside down to die by a sailboat keel. Groundings in sand, or even the churning action of propellers, can cause major localized siltation, indirectly killing adjacent corals.

During the 20th century recreational scuba diving was considered to have generally low environmental impact, and was consequently one of the activities permitted in most marine protected areas. Basic diver training has concentrated on an acceptable risk to the diver, and paid less attention to the environment. The increase in the popularity of diving and in tourist access to sensitive ecological systems has led to the recognition that the activity can have significant environmental consequences.

Scuba diving has grown in popularity during the 21st century, as is shown by the number of certifications issued worldwide. Scuba diving tourism is a growth industry, and it is necessary to consider environmental sustainability, as the expanding impact of divers can adversely affect the marine environment in several ways, and the impact also depends on the specific environment. Tropical coral reefs are more easily damaged by poor diving skills than reefs where the environment is more robust. The same pleasant sea conditions that allow development of relatively delicate and highly diverse ecologies also attract the greatest number of tourists, including divers who dive infrequently, exclusively on vacation and never fully develop the skills to dive in an environmentally friendly way.

Sediment Sediment pollution from land has severe consequences for coral reef ecosystems. However, even along one coastline, separate reefs can experience different water flow conditions that affect sediment distribution. A 2015 study assessed sediment from two streambeds less than a mile apart on the island of Lānaʻi, Hawaii. One site experienced quick-moving currents that efficiently flushed away sediment, protecting the reef, while the other was subjected to currents and wave conditions that allowed sediment to be continuously re-suspended in the water, starving the reef of light.

Overfishing The vast biodiversity of coral reefs consequently create an abundant fishing area for locals. This leads to overfishing of reef herbivore organisms which makes the coral reefs more vulnerable and unable to recover from large environmental disturbances. Unfortunately, most marine ecologists expect future oceans to be more overfished than now.

Currently, the majority of overfishing is done by commercial fishing companies. Local fisheries have a minimal impact on the health of the ocean in comparison additionally, local fishermen are increasingly replaced by commercial companies. Oftentimes, illegal industrial fishing ships will cast wide nets in the water, capturing large amount of sea life. These nets will drag across the ocean and coral reefs, destroying them in the process. Lots of by-catch occurs in this process. These nets can also become detached from the ship and become ghost nets and end up catching and trading sea life. These nets can remain in the ocean for hundreds of years.

Other See Environmental issues with coral reefs#Issues

UV Filters UV radiation is a threat to public health in terms of sunburn risk, and skin cancer. In turn People use sunscreen that has UV filters in it to absorb excess UV radiation. Protecting the skin, and each UV filter has its own absorption rate based on the SPF amount for skin sensitivity. UV filters in sunscreen can be either organic or inorganic. Inorganic UV filters reflect and absorb UV light. Zinc oxide is widely used inorganic UV filters and are mainly incorporated into sunscreen because the larger, size particles usually leave unpleasant white marks on the skin. Some of the mineral UV filters do get additional coatings such as alumina or incorporated manganese to minimize the formation of free radicals. Exposure to all tested sunscreen and led to the conclusion that UV filters induce a lytic viral cycle that leads to coral bleaching. However, the study is limited by the lack of analytical data as well as flaws in the experimental setup.

Monitoring The continuous assessment of the health state of coral reef is an important task. To perform large-scale studies on the condition and bleaching of shallow-water coral reefs usually satellite or airborne imagery is used. To more accurately document the status of the reef, recently, photogrammetric techniques have been introduced to generate orthophotos of the interested areas either by using consumer drones or by capturing photos with scuba divers. To analyze and annotate the large orthographic images generated with these techniques semi-automatic segmentation techniques are applied using open source tools like TagLab.

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