Habyarimana is a Rwandan surname. Notable people with the surname include:
Juvénal Habyarimana (1937–1994), president of Rwanda 1973–1994 Agathe Habyarimana (née Kanziga, born 1942), wife of Juvénal Habyarimana Emmanuel Habyarimana, former Rwandan Minister of Defence